A far downstream enhancer for murine Bcl11b controls its T-cell specific expression

L Li, JA Zhang, M Dose, HY Kueh… - Blood, The Journal …, 2013 - ashpublications.org
L Li, JA Zhang, M Dose, HY Kueh, R Mosadeghi, F Gounari, EV Rothenberg
Blood, The Journal of the American Society of Hematology, 2013ashpublications.org
Bcl11b is a T-cell specific gene in hematopoiesis that begins expression during T-lineage
commitment and is required for this process. Aberrant expression of BCL11B or proto-
oncogene translocation to the vicinity of BCL11B can be a contributing factor in human T-
ALL. To identify the mechanism that controls its distinctive T-lineage expression, we
corrected the identified Bcl11b transcription start site and mapped a cell-type–specific
differentially methylated region bracketing the Bcl11b promoter. We identified a 1.9-kb …
Abstract
Bcl11b is a T-cell specific gene in hematopoiesis that begins expression during T-lineage commitment and is required for this process. Aberrant expression of BCL11B or proto-oncogene translocation to the vicinity of BCL11B can be a contributing factor in human T-ALL. To identify the mechanism that controls its distinctive T-lineage expression, we corrected the identified Bcl11b transcription start site and mapped a cell-type–specific differentially methylated region bracketing the Bcl11b promoter. We identified a 1.9-kb region 850 kb downstream of Bcl11b, “Major Peak,” distinguished by its dynamic histone marking pattern in development that mirrors the pattern at the Bcl11b promoter. Looping interactions between promoter-proximal elements including the differentially methylated region and downstream elements in the Major Peak are required to recapitulate the T-cell specific expression of Bcl11b in stable reporter assays. Functional dissection of the Major Peak sequence showed distinct subregions, in which TCF-1 sites and a conserved element were required for T-lineage–specific activation and silencing in non-T cells. A bacterial artificial chromosome encompassing the full Bcl11b gene still required the addition of the Major Peak to exhibit T-cell specific expression. Thus, promoter-proximal and Major Peak sequences are cis-regulatory elements that interact over 850 kb to control expression of Bcl11b in hematopoietic cells.
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