[HTML][HTML] Decitabine reactivated pathways in platinum resistant ovarian cancer

F Fang, Q Zuo, J Pilrose, Y Wang, C Shen, M Li… - Oncotarget, 2014 - ncbi.nlm.nih.gov
F Fang, Q Zuo, J Pilrose, Y Wang, C Shen, M Li, P Wulfridge, D Matei, KP Nephew
Oncotarget, 2014ncbi.nlm.nih.gov
Combination therapy with decitabine, a DNMTi and carboplatin resensitized chemoresistant
ovarian cancer (OC) to platinum inducing promising clinical activity. We investigated gene-
expression profiles in tumor biopsies to identify decitabine-reactivated pathways associated
with clinical response. Gene-expression profiling was performed using RNA from paired
tumor biopsies before and 8 days after decitabine from 17 patients with platinum resistant
OC. Bioinformatic analysis included unsupervised hierarchical-clustering, pathway and …
Abstract
Combination therapy with decitabine, a DNMTi and carboplatin resensitized chemoresistant ovarian cancer (OC) to platinum inducing promising clinical activity. We investigated gene-expression profiles in tumor biopsies to identify decitabine-reactivated pathways associated with clinical response. Gene-expression profiling was performed using RNA from paired tumor biopsies before and 8 days after decitabine from 17 patients with platinum resistant OC. Bioinformatic analysis included unsupervised hierarchical-clustering, pathway and GSEA distinguishing profiles of “responders”(progression-free survival, PFS> 6months) and “non-responders”(PFS< 6months). Functional validation of selected results was performed in OC cells/tumors. Pre-treatment tumors from responders expressed genes associated with enhanced glycosphingolipid biosynthesis, translational misregulation, decreased ABC transporter expression, TGF-β signaling, and numerous metabolic pathways. Analysis of post-treatment biopsies from responders revealed overexpression of genes associated with reduced Hedgehog pathway signaling, reduced DNA repair/replication, and cancer-associated metabolism. GO and GSEA analyses revealed upregulation of genes associated with glycosaminoglycan binding, cell-matrix adhesion, and cell-substrate adhesion. Computational findings were substantiated by experimental validation of expression of key genes involved in two critical pathways affected by decitabine (TGF-β and Hh). Gene-expression profiling identified specific pathways altered by decitabine and associated with platinum-resensitization and clinical benefit in OC. Our data could influence patient stratification for future studies using epigenetic therapies.
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